Day 7

report
compendium
Author

Amy Heather

Published

June 7, 2024

Note

Created summary report and started on research compendium.

Work log

Summary report

Produced summary report.

Research compendium

Started on research compendium…

  • Moved .csv files (patients.csv, travel_matrix.csv, units.csv) from sim/ to data/ and modified file paths in scripts accordingly (model.py and units.py)
  • Moved .py files (sim_replicate.py and sim_single.py) from main folder into sim/ and modified import in notebook accordingly (reproduction.ipynb)
  • Created test for successful reproduction using pytest
    • Amended run_replications() to accept alternative path to save results to
    • Copied data from my successful reproduction from output/ to test/data
    • Copied parameters from reproduction.ipynb into test_model.py
    • Add __init__.py to sim/ and modified imports in each of the .py scripts accordingly
    • Started on test to run the model and compare test results against saved results in the test folder