Day 1

Note

Set-up repository and upload materials. Total time used: 0h 32m (1.3%)

15.58-16.03, 16.21-16.30: Set-up repository

• Create repository from template
• Set up environment
• Modified template files:
  • README.md
  • quarto site index.qmd
  • CITATION.cff
  • _quarto.yml
• Set up site on GitHub pages (quarto publish gh-pages)

16.36-16.41: Upload code and update license

Model code is available at: https://github.com/mikesweeting/AAA_DES_model

It is available under an LGPL-3.0 license, so I updated this repository to use the same license (GNU LESSER GENERAL PUBLIC LICENSE Version 3). This license requires:

• Copy of full license and original copyright notice
• Include source code when distribute derivative work
• License derivative work under same license

16.43-16.56: Upload journal article

The article is published with PLoS ONE and has a permissive copyright statement:

“Copyright: © 2021 Kim et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.”

https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0253327

Hence, uploaded article, figures, tables and supplementary materials to original_study/. Converted .tif files to .png (e.g. convert sup3.tif sup3.png). Converted .docx to .pdf (libreoffice --headless --convert-to pdf sup1.docx --outdir sup1.pdf).

Amended study_publication.qmd to display these.

Add the study to references.bib.

Timings

import sys
sys.path.append('../')
from timings import calculate_times

# Minutes used prior to today
used_to_date = 0

# Times from today
times = [
    ('15.58', '16.03'),
    ('16.21', '16.30'),
    ('16.36', '16.41'),
    ('16.43', '16.56')]

calculate_times(used_to_date, times)

Time spent today: 32m, or 0h 32m
Total used to date: 32m, or 0h 32m
Time remaining: 2368m, or 39h 28m
Used 1.3% of 40 hours max