Reproducing Huang et al. 2019

Note

Set-up repository and add article and code. Total time used: 0h 45m (1.9%)

11.53-12.20, 12.27-12.33: Set-up and update repository

I have previously (Friday 21st June 2024) sent an email to the corresponding author (Dr. Shiwei Huang) to inform about the study, using the template email from our protocol.

Today, used template repository to create this repository and updated it to be relevant to Huang et al. 2019 - updated..

README
Home page (index.qmd)
Logbook
CITATION.cff
_quarto.yml

From a quick look at their code repository, can see they use a GNU General Public License version 3. The requirements of this license are to:

Include a copy of the full license
State all significant changes made to the software
Make the original source code available when distributing binaries based on that work
Include a copy of the original copyright notice

It allows the code to be changed and distributed to others (as long as release under GPL v3 also). Hence, updated license (and references to it) to GNU GPL 3.0 accordingly.

Created environment for book.

12.34-12.36: Upload model code

Uploaded copy of https://github.com/shiweih/desECR to original_study/.

12.43-12.47, 14.53-14.59: Check journal article license and upload

The journal article was published in Frontiers in Neurology and is available at https://doi.org/10.3389/fneur.2019.00653. It has the following copyright statement:

“© 2019 Huang, Maingard, Kok, Barras, Thijs, Chandra, Brooks and Asadi. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.”

Hence, we are free to upload this article and images to the repository (ensuring we cite throughout whenever using them), as well as the supplementary material.

I set this up to be displayed within the quarto site.

Timings

import sys
sys.path.append('../')
from timings import calculate_times

# Minutes used prior to today
used_to_date = 0

# Times from today
times = [
    ('11.53', '12.20'),
    ('12.27', '12.33'),
    ('12.34', '12.36'),
    ('12.43', '12.47'),
    ('14.53', '14.59')]

calculate_times(used_to_date, times)

Time spent today: 45m, or 0h 45m
Total used to date: 45m, or 0h 45m
Time remaining: 2355m, or 39h 15m
Used 1.9% of 40 hours max