Examples
Research projects
Projects that document and share a single, well-defined piece of research, usually with its own paper, report, or case study, plus code and/or interactive outputs.
University of Exeter
Summary of eight computational reproducibility assessments from STARS Work Package 1, presented as a detailed digital appendix to the paper with full methods, results, tables, and figures.
Accompanies their paper. Site includes results of systematic review, and genomics analysis results. (Unfortunately cannot find code)
University of Exeter
Documentation for EOM-RCC,a platform cost-effectiveness model encompassing each decision node in the disease area for advanced renal cell carcinoma.
Website for project including news/updates, pages for advisory group and participants, contact information and publications. (Unfortunately cannot find code)
Supporting website for their paper containing supplemental code examples.
Shares results of systematic review, accompanying their paper.
Analysis for Large-scale clustering of longitudinal faecal calprotectin and C-reactive protein profiles in inflammatory bowel disease
Presents the analyses carreid out in their paper.
Website for an open voting-records dataset, with a data overview, detailed codebook of all variables, and information about the repository.
R project recording various simulation experiments.
Project website with maps, photo galleries, interactive figures, updates.
Example using the template site, reporting on potate late blight forecasting model.
Manuscripts
Papers wrote fully using Quarto.
Online report with background/methods/results and links to extra pages providing more details.
Clinical Performance of Tumor-Informed versus Tumor-Agnostic ctDNA Assays for Colorectal Cancer Recurrence
Webpage-based report for systematic review and meta-analysis paper.
Extended results and supplementary information for their paper.
Homepage for research programme or team
Overarching homepages that present an entire project, programme, lab, or community, bringing together people, research, resources, news, and key links in one place.
University of Exeter
Summary site for the STARS research project, with dedicated pages describing each component of the project and separate pages for every associated publication, including links to code and embedded papers.
University of Exeter
Programme homepage describing the HSMA training scheme, with resources, guidance, news, and pages on each and every HSMA student project.
Lab website with blog posts containing latest news, and with pages listing the team, research themes, publications, resources and opportunities.
Research group site listing publications, people, opportunities. Also has latest news and links to their learning resources, including open textbooks and teaching materials built with tools like Bookdown and Quarto.
Centre homepage with news and event listings, and individual pages on their research areas and services.
Club site introducing the group's mission, events, and workshops, with interactive resources, coding materials, and a polished, animated homepage experience.
Group homepage with detailed researcher profiles, plus research area overviews, publications, software links, and news.
Community site sharing reports, blog posts, events, resources, and information about fellows and contributors, supporting users of R across the NHS.
Group homagepage with blog posts, project summaries, publications, team, events and more.
Project from the Royal Statistical Society - site contains mostly blog posts.
Research group at the Centre for Mathematical Modelling of Infectious Diseases of the Longon School of Hygiene and Tropical Medicine.
Project website with roadmap, info on team, and links out to other sites focused on community and design.
Training / Modules / Courses / Etc.
Self-paced learning resources, workshop materials, and full course sites that use Quarto to deliver lectures, exercises, tutorials, and technical guidance, often alongside code and datasets.
University of Exeter
Self-paced training resource on creating discrete-event simulation models in Python and R as part of a reproducible analytical pipeline.
University of Exeter
Tutorial on testing in Python and R, accompanies HDR UK Futures training videos.
University of Exeter
Self-paced training resource on creating discrete-event simulation models in Python using SimPy.
Researcher profiles
Personal websites and blogs for researchers.
Conferences and events
Event and seminar websites that share programmes, schedules, speakers, and materials for conferences, workshops, and talk series, often with links to slides, recordings, and related resources.
Conference website with registration, submission, programme, details about hackathon, etc.
Package documentation
Use Quarto (with tools like quartodoc) to build clean, navigable documentation sites for your Python or R packages, including API reference, usage guides, and examples.
University of Exeter
Python package which runs linters and type checkers on code embedded in Quarto .qmd files.
University of Exeter
Python package for creating animated visualisations of queues and pathways from simulation or real-world data.
Other cool examples
Further examples of interesting uses of quarto in research.
University of Exeter
Directory of open-source tools, packages, and projects for analytics and decision science in healthcare.
Non-Quarto examples
Inspiring research websites, reports, and project pages (built without Quarto) that model good practice in openness, documentation, and communication of analytic work.
Model and code sharing practices in healthcare discrete-event simulation: a systematic scoping review
University of Exeter
Companion to publication which provides more detailed introduction, methods, results, discussion.
University of Exeter
Companion to publication with full record of study - in this case, all prompts, code, tests, results.
University of Exeter
Full results from project, supplementary to reports and papers.
Describes research project modelling ambulances - including background, method, and results - serving as foundation for conference paper.
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